Научные руководители
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Комиссаров Алексей Сергеевичкандидат биологических наук akomissarov@itmo.ru Структурное подразделение: институт прикладных компьютерных наук Должность: доцент (квалификационная категория "ординарный доцент") Профиль: 2.7.1. - Биотехнологии пищевых продуктов, лекарственных и биологически активных веществ 03.02.07 - Генетика 03.01.04 - Биохимия 1.5.4. - Биохимия 1.5.7. - Генетика Область интересов: Биоинформатика, геномная биоинформатика, постгеномные технологии, персонализированная медицина, нутригеномика, геномика биоматериалов, сборка геномов, аннотация геномов / Прикладная геномика, биотехнология пищевых продуктов . Структурно-функциональная организация генов. Функциональная организация генома. Генетика микроорганизмов. Генетика животных. Математическая генетика и биоинформатика. Рабочий язык: Английский, Русский |
Публикации руководителя
| Выходные данные | Год | Индексирование в БД |
| Velichko N.S., Kokoulin M.S., Dmitrenok P.S., Grinev V.S., Kuchur P.D., Komissarov A.S., Fedonenko Y.P. Lipopolysaccharides of Herbaspirillum species and their relevance for bacterium–host interactions//International Journal of Biological Macromolecules, 2024, Vol. 261, No. 1, pp. 129516 | 2024 | Scopus, Web of Science, Белый список |
| Kliver S., Houck M.L., Perelman P.L., Totikov A., Tomarovsky A., Dudchenko O., Omer A.D., Colaric Z., Weisz D., Aiden E.L., Chan S., Hastie A., Komissarov A., Ryder O., Graphodatsky A., Johnson W., Maldonado J., Pukazhenthi B., Marinari P.E., Wildt D., Koepfli K. Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)//Journal of Heredity, 2023, Vol. 114, No. 5, pp. 539-548 | 2023 | Scopus, Web of Science, Белый список |
| Yakupova A., Tomarovsky A., Totikov A., Beklemisheva V., Logacheva M., Perelman P.L., Komissarov A., Dobrinin P., Krasheninnikova K., Tamazian G., Serdyukova N.A., Rayko M., Bulyonkova T., Cherkasov N., Pylev V., Peterfeld V., Penin A., Balanovska E., Lapidus A., Dna Z., O’Brien S., Graphodatsky A., Koepfli K., Kliver S. Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal//Genes, 2023, Vol. 14, No. 3, pp. 619 | 2023 | Scopus, Web of Science, Белый список |
| Kusakin A.V., Goleva O.V., Danilov L., Krylov A.V., Tsay V.V., Kalinin R.S., Tian N.S., Eismont Y.A., Mukomolova A.L., Chukhlovin A.B., Komissarov A.S., Glotov O.S. The Telomeric Repeats of HHV-6A Do Not Determine the Chromosome into Which the Virus Is Integrated//Genes, 2023, Vol. 14, No. 2, pp. 521 | 2023 | Scopus, Web of Science, Белый список |
| Afonnikova S.D., Komissarov A.S., Kuchur P.D. Unique or not unique? Comparative genetic analysis of bacterial O-antigens from the Oxalobacteraceae family [Сравнительный генетический анализ О-антигенов бактерий семейства Oxalobacteraceae: уникальность или тривиальность?]//Вавиловский журнал генетики и селекции = Vavilovskii Zhurnal Genetiki i Selektsii, 2022, Vol. 26, No. 8, pp. 810-818 | 2022 | RSCI, Scopus, Web of Science, ВАК, РИНЦ |
| Ryakhovsky S., Zhernakova D.V., Korchagin V., Vergun A., Girnyk A., Dikaya V., Arakelyan M., Komissarov A.S., Ryskov A. The mixed liver and kidney transcriptome dataset of Darevskia valentini rock lizard//BMC Research Notes, 2022, Vol. 15, No. 1, pp. 345 | 2022 | Scopus, Web of Science |
| Majeske A., Mercado Capote A.J., Komissarov A., Bogdanova A., Schizas N.V., Castro Marquez S.O., Hilkert K., Wolfsberger W., Oleksyk T. The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)//GigaByte, 2022, Vol. 2022, pp. 12 | 2022 | Scopus |
| Ochkalova S., Korchagin V., Vergun A., Urin A., Zilov D., Ryakhovsky S., Girnyk A., Martirosyan I., Zhernakova D.V., Arakelyan M., Danielyan F., Kliver S., Brukhin V., Komissarov A.S., Ryskov A. First Genome of Rock Lizard Darevskia valentini Involved in Formation of Several Parthenogenetic Species//Genes, 2022, Vol. 13, No. 9, pp. 1569 | 2022 | Scopus, Web of Science |
| Takki O., Komissarov A., Kulak M., Galkina S. Identification of Centromere-Specific Repeats in the Zebra Finch Genome//Cytogenetic and Genome Research, 2022, Vol. 162, No. 1-2, pp. 55-63 | 2022 | Scopus, Web of Science |
| Dukhinova M.S., Kokinos E., Kuchur P.D., Komissarov A., Shtro A. Macrophage-derived cytokines in pneumonia: Linking cellular immunology and genetics//Cytokine and Growth Factor Reviews, 2021, Vol. 59, pp. 46-61 | 2021 | Scopus, Web of Science |
| Ryakhovsky S., Dikaya V., Korchagin V., Vergun A., Danilov L., Ochkalova S., Girnyk A., Zhernakova D.V., Arakelyan M., Brukhin V., Komissarov A.S., Ryskov A. De novo transcriptome assembly and annotation of parthenogenetic lizard Darevskia unisexualis and its parental ancestors Darevskia valentini and Darevskia raddei nairensis//Data in Brief, 2021, Vol. 39, pp. 107685 | 2021 | Scopus, Web of Science |
| Tamazian G., Dobrynin P.V., Zhuk A.S., Zhernakova D.V., Perelman P.L., Serdyukova N.A., Graphodatsky A., Komissarov A.S., Kliver S.F., Cherkasov N., Scott A.F., Mohr D.W., Koepfli K., O’Brien S., Krasheninnikova K. Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi//Journal of Heredity, 2021, Vol. 112, No. 6, pp. 540-548 | 2021 | Scopus, Web of Science |
| Shevchenko A., Zhernakova D.V., Malov S., Komissarov A., Kolchanova S., Tamazian G., Antonik A., Cherkasov N., Kliver S., Turenko A., Rotkevich M., Evsyukov I., Vlahov D., Thami P., Gaseitsiwe S., Novitsky V., Essex M., O’Brien S. Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population//Proceedings of the National Academy of Sciences of the United States of America, 2021, Vol. 118, No. 47, pp. e2107830118 | 2021 | Scopus, Web of Science |
| Kolchanova S., Komissarov A., Kliver S., Mazo-Vargas A., Afanador Y., Velez-Valentin J., De La Rosa R., Castro-Marquez S., Rivera-Colon I., Majeske A., Wolfsberger W., Hans T., Corvelo A., Martinez-Cruzado J., Glenn T., Robinson O., Koepfli K., Oleksyk T. Molecular phylogeny and evolution of amazon parrots in the greater antilles//Genes, 2021, Vol. 12, No. 4, pp. 608 | 2021 | Scopus, Web of Science |
| Ряховский С.С., Комиссаров А.С. Поиск и визуализация TAAR генов в собранных геномах позвоночных // Гены и клетки [Genes and Cells] -2020. - Т. 15. - № S3. - С. 147 | 2020 | RSCI, ВАК, РИНЦ |
| Velichko N.S., Kokoulin M.S., Sigida E.N., Kuchur P.D., Komissarov A.S., Kovtunov E.A., Fedonenko Y.P. Structural and genetic characterization of the colitose-containing O-specific polysaccharide from the lipopolysaccharide of Herbaspirillum frisingense GSF30T//International Journal of Biological Macromolecules, 2020, Vol. 161, pp. 891-897 | 2020 | Scopus, Web of Science |
| Rayko M., Komissarov A.S., Kwan J., Lim-Fong G., Rhodes A., Kliver S., Kuchur P.D., O’Brien S., Lopez J. Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines//Scientific Data, 2020, Vol. 7, No. 1, pp. 356 | 2020 | Scopus, Web of Science |
| Zhernakova D.A., Brukhin V., Malov S., Oleksyk T., Koepfli K., Zhuk A., Dobrynin P., Klivera S., Cherkasov N., Tamazian G., Rotkevich M., Krasheninnikova K., Evsyukov I., Sidorov S., Gorbunova A., Chernyaeva E., Shevchenko A., Kolchanova S., Komissarov A.S., Simonov S., Antonik A., Logachev A., Polevh D., Pavlovah O., Glotov A., Ulantsev V., Noskova E., Davydova T., Sivtseva T., Limborska S., Balanovsky O., Osakovsky V., Novozhilov A., Puzyrev V., O'Brien S. Genome-wide sequence analyses of ethnic populations across Russia//Genomics, 2020, Vol. 112, No. 1, pp. 442-458 | 2020 | Scopus, Web of Science |
| Zilov D.S., Komissarov A.S. Pannopi: prokaryotic genome assembly and annotation pipeline//BMC Bioinformatics, 2020, Vol. 21, No. Suppl20, pp. 6-7 | 2020 | Scopus, Web of Science |
| Чеснокова П.Д., Ковтунов Е.А., Величко Н.С., Комиссаров А.С. Особенности структурной организации оперонов о-антигена в геноме herbaspirillum frisingense // Гены и клетки [Genes and Cells] -2020. - Т. 15. - № S3. - С. 153 | 2020 | RSCI, ВАК, РИНЦ |
| Буланцев Н.А., Комиссаров А.С., Кошель Е.И., Круглов Е.Е., Мякишева Ю.В., Кафтырева Л.А. Метагеномный анализ биоптатов толстой кишки пациентов с язвенным колитом // Гены и клетки [Genes and Cells] -2020. - Т. 15. - № S3. - С. 128 | 2020 | RSCI, ВАК, РИНЦ |
| Дикая В.А., Травина А.О., Остромышенский Д.И., Подгорная О.И., Комиссаров А.С. Анализ состава транскриптома травяной лягушки rana temporaria // Гены и клетки [Genes and Cells] -2020. - Т. 15. - № S3. - С. 132 | 2020 | RSCI, ВАК, РИНЦ |
| Marra N.J., Stanhope M.J., Jue N.K., Wang M., Sun Q., Bitar P.P., Richards V.P., Komissarov A., Rayko M., Kliver S. White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability//Proceedings of the National Academy of Sciences of the United States of America, 2019, Vol. 116, No. 10, pp. 4446-4455 | 2019 | Scopus, Web of Science |
| Kolchanova S., Kliver S., Komissarov A.S., Dobrinin P., Tamazian G., Grigorev K., Wolfsberger W., Majeske A., Velez-Valentin J., De La Rosa R., Paul-Murphy J.R., Guzman D.S., Court M.H., Rodriguez-Flores J.L., Martinez-Cruzado J., Oleksyk T. Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation//Genes, 2019, Vol. 10, No. 1, pp. 54 | 2019 | Scopus, Web of Science |
| Kulak M., Komissarov A.S., Dyomin A., Fillon V., Gaginskaya E., Saifitdinova A., Galkina S. Description of new tandem repeats in the genome of Japanese quail//Molecular Cytogenetics, 2019, Vol. 12, No. S1, pp. 4 | 2019 | Scopus, Web of Science |
| Koepfli K., Tamazian G., Wildt D., Dobrynin P., Kim C., Frandsen P.B., Godinho R., Yurchenko A.A., Komissarov A., Krasheninnikova K., Kliver S., Kolchanova S. Whole genome sequencing and re-sequencing of the sable antelope (Hippotragus niger): a resource for monitoring diversity in ex situ and in situ populations//G3: Genes, Genomes, Genetics, 2019, Vol. 9, No. 6, pp. 1785-1793 | 2019 | Scopus, Web of Science |
| Komissarov A.S., Galkina S.A., Koshel E.I., Kulak M.M., Dyomin A.G., O'Brien S.J., Gaginskaya E.R., Saifitdinova A.F. New high copy tandem repeat in the content of the chicken W chromosome//Chromosoma, 2018, Vol. 127, No. 1, pp. 73-83 | 2018 | Scopus, Web of Science |
| Volodkina V.A., Kulak M.M., Komissarov A.S., Galkina S.A., Gaginskaya E.R., Saifitdinova A.F. Chicken tandem repeats Ggal10 and Ggal20 are specific to different microchromosomes//Comparative Cytogenetics, 2018, Vol. 12, No. 3, pp. 357-358 | 2018 | Scopus, Web of Science, ВАК |
| O'Brien S.J., Tamazian G., Komissarov A.S., Dobrynin P.V., Krasheninnikova K.V., Kliver S.F., Cherkasov N.A., Koepfli K. A Moving Landscape for Comparative Genomics in Mammals//Comparative Cytogenetics, 2018, Vol. 12, No. 3, pp. 301 | 2018 | Scopus, Web of Science, ВАК |
| Kliver S., Rayko M., Komissarov A., Bakin E., Zhernakova D.V., Prasad K., Rushworth C., Baskar R., Smetanin D., Schmutz J., Rokhsar D.S., Mitchell-Olds T., Grossniklaus U., Brukhin V. Assembly of the Boechera retrofracta genome and evolutionary analysis of apomixis-associated genes//Genes, 2018, Vol. 9, No. 4, pp. 185 | 2018 | Scopus, Web of Science |
| Kulak M.M., Dyomin A.G., Komissarov A.S., Fillon V., Saifitdinova A.F., Pavlova O.A., Gaginskaya E.R., Galkina S.A. New pericentromeric repeat identified in the genome of japanese quail//Comparative Cytogenetics, 2018, Vol. 12, No. 3, pp. 337-338 | 2018 | Scopus, Web of Science, ВАК |
| Grigorev K., Kliver S., Dobrynin P., Komissarov A., Wolfsberger W., Krasheninnikova K., Afanador-Hernandez Y.M., Brandt A.L., Paulino L.A., Carreras R., Rodriguez L.E., Nunez A., Brandt J.R., Silva F., Hernandez-Martich J.D., Majeske A., Antunes A., Roca A.L., O'Brien S.J., Martinez-Cruzado J., Oleksyk T. Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola//GigaScience, 2018, Vol. 7, No. 6, pp. giy025 | 2018 | Scopus, Web of Science |
| Komissarov A., Vij S., Yurchenko A., Trifonov V., Thevasagayam N., Saju J., Sridatta P.S., Purushothaman K., Graphodatsky A., Orban L., Kuznetsova I. B Chromosomes of the Asian seabass (Lates calcarifer) contribute to genome variations at the level of individuals and populations//Genes, 2018, Vol. 9, No. 10, pp. 464 | 2018 | Scopus, Web of Science |
| Biltueva L.S., Prokopov D.Y., Makunin A.I., Komissarov A.S., Kudryavtseva A.V., Lemskaya N.A., Vorobieva N.V., Serdyukova N.A., Romanenko S.A., Gladkikh O.L., Graphodatsky A., Trifonov V.A. Genomic organization and physical mapping of tandemly arranged repetitive DNAs in sterlet (Acipenser ruthenus)//Cytogenetic and Genome Research, 2017, Vol. 152, No. 3, pp. 148-157 | 2017 | Scopus, Web of Science |
| Brandt A.L., Grigorev K., Afanador-Hernandez Y.M., Paulino L.A., Murphy W.J., Nunez A., Komissarov A., Brandt J.R., Dobrynin P., Hernandez-Martich J.D., Maria R., O’Brien S.J. Mitogenomic sequences support a north–south subspecies subdivision within Solenodon paradoxus//Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, 2017, Vol. 28, No. 5, pp. 662-670 | 2017 | Scopus, Web of Science |
| Figueiro H.V., Li G., Trindade F.J., Assis J., Pais F., Fernandes G., Santos S.H., Hughes G.M., Komissarov A., Antunes A., Trinca C.S., Rodrigues M., Linderoth T., Bi K., Silveira L., Azevedo F.C., Kantek D., Ramalho E., Brassaloti R.A., Villela P.M., Nunes A.L., Teixeira R.H., Morato R.G., Loska D., Saragueta P., Gabaldon T., Teeling E., O'Brien S.J., Nielsen R., Coutinho L.L., Oliveira G., Murphy W.J., Eizirik E. Genome-wide signatures of complex introgression and adaptive evolution in the big cats//Science Advances, 2017, Vol. 3, No. 7, pp. e1700299 | 2017 | Scopus, Web of Science |