Научные руководители
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Райко Михаил Петровичкандидат биологических наук mprayko@itmo.ru Структурное подразделение: передовая инженерная школа ИТМО интердисциплинарного инжиниринга Должность: доцент (квалификационная категория "ординарный доцент") Профиль: 1.5.7. - Генетика Область интересов: Биоинформатика, генетика, геномика, филогенетика, сравнительная геномика, вирусы, плазмиды, метагеномика, транскриптомика Рабочий язык: Английский, Русский |
Публикации руководителя
| Выходные данные | Год | Индексирование в БД |
| Mesentsev Y., Bondarenko N., Kamyshatskaya O., Nassonova E., Glotova A., Loiko S., Istigechev G., Kulemzina A., Abakumov E., Rayko M., Lapidus A., Smirnov A. Thecochaos is not a myth: study of the genus Thecochaos (Amoebozoa, Discosea) – a rediscovered group of lobose amoeba, with short SSU gene//Organisms Diversity and Evolution, 2024, Vol. 23, No. 1, pp. 7-24 | 2024 | Scopus, Web of Science, Белый список |
| Kravchenko I., Rayko M., Sokornova S., Tikhonova E., Konopkin A., Lapidus A. Analysis of rhizosphere fungal community of agricultural crops cultivated in laboratory experiments on Chernevaya taiga soil//World Journal of Microbiology and Biotechnology, 2024, Vol. 40, No. 1, pp. 27 | 2024 | Scopus, Web of Science, Белый список |
| Meleshko D., Prjbelski A.D., Raiko M., Tomescu A., Tilgner H., Hajirasouliha I. CLOUDRNASPADES: isoform assembly using bulk barcoded RNA sequencing data//Bioinformatics, 2024, Vol. 40, No. 2, pp. btad781 | 2024 | Scopus, Web of Science, Белый список |
| Yakupova A., Tomarovsky A., Totikov A., Beklemisheva V., Logacheva M., Perelman P.L., Komissarov A., Dobrinin P., Krasheninnikova K., Tamazian G., Serdyukova N.A., Rayko M., Bulyonkova T., Cherkasov N., Pylev V., Peterfeld V., Penin A., Balanovska E., Lapidus A., Dna Z., O’Brien S., Graphodatsky A., Koepfli K., Kliver S. Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal//Genes, 2023, Vol. 14, No. 3, pp. 619 | 2023 | Scopus, Web of Science, Белый список |
| Lotonin K., Bondarenko N., Nassonova E., Rayko M., Smirnov A. Balamuthia spinosa n. sp. (Amoebozoa, Discosea) from the brackish-water sediments of Niva Bay (Baltic Sea, The Sound) — a novel potential vector of Legionella pneumophila in the environment//Parasitology Research, 2022, Vol. 121, No. 2, pp. 713–724 | 2022 | Scopus, Web of Science |
| Yutin N., Rayko M., Antipov D., Mutz P., Wolf Y.I., Krupovic M., Koonin E.V. Varidnaviruses in the Human Gut: A Major Expansion of the Order Vinavirales//Viruses, 2022, Vol. 14, No. 9, pp. 1842 | 2022 | Scopus, Web of Science |
| Antipov D., Rayko M., Kolmogorov M., Pevzner P.A. viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data//Genome Biology, 2022, Vol. 23, No. 1, pp. 57 | 2022 | Scopus, Web of Science |
| Bakin E., Sezer F., Ozbilen A., Kilic I., Uner B., Rayko M., Taskin K., Brukhin V. Phylogenetic and Expression Analysis of CENH3 and APOLLO Genes in Sexual and Apomictic Boechera Species//Plants, 2022, Vol. 11, No. 3, pp. 387 | 2022 | Scopus, Web of Science |
| Kravchenko I., Rayko M., Tikhonova E., Konopkin A., Abakumov E., Lapidus A. Agricultural crops grown in laboratory conditions on Chernevaya taiga soil demonstrate unique composition of the rhizosphere microbiota//Microorganisms, 2022, Vol. 10, No. 11, pp. 2171 | 2022 | Scopus, Web of Science |
| Benler S., Yutin N., Antipov D., Rayko M., Shmakov S., Gussow A.B., Pevzner P., Koonin E.V. Thousands of previously unknown phages discovered in whole-community human gut metagenomes//Microbiome, 2021, Vol. 9, No. 1, pp. 78 | 2021 | Scopus, Web of Science |
| Rayko M., Sokornova S., Lapidus A. Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism//Journal of Fungi, 2021, Vol. 7, No. 11, pp. 908 | 2021 | Scopus, Web of Science |
| Yutin N., Benler S., Shmakov S.A., Wolf Y.I., Tolstoy I., Rayko M., Antipov D., Pevzner P.A., Koonin E.V. Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features//Nature Communications, 2021, Vol. 12, No. 1, pp. 1044 | 2021 | Scopus, Web of Science |